clickhouse primary key

Such an index allows the fast location of specific rows, resulting in high efficiency for lookup queries and point updates. All columns in a table are stored in separate parts (files), and all values in each column are stored in the order of the primary key. Index granularity is adaptive by default, but for our example table we disabled adaptive index granularity (in order to simplify the discussions in this guide, as well as make the diagrams and results reproducible). ClickHouse is a column-oriented database management system. Doing log analytics at scale on NGINX logs, by Javi . This ultimately prevents ClickHouse from making assumptions about the maximum URL value in granule 0. each granule contains two rows. In ClickHouse the physical locations of all granules for our table are stored in mark files. MergeTreePRIMARY KEYprimary.idx. 'https://datasets.clickhouse.com/hits/tsv/hits_v1.tsv.xz', 'WatchID UInt64, JavaEnable UInt8, Title String, GoodEvent Int16, EventTime DateTime, EventDate Date, CounterID UInt32, ClientIP UInt32, ClientIP6 FixedString(16), RegionID UInt32, UserID UInt64, CounterClass Int8, OS UInt8, UserAgent UInt8, URL String, Referer String, URLDomain String, RefererDomain String, Refresh UInt8, IsRobot UInt8, RefererCategories Array(UInt16), URLCategories Array(UInt16), URLRegions Array(UInt32), RefererRegions Array(UInt32), ResolutionWidth UInt16, ResolutionHeight UInt16, ResolutionDepth UInt8, FlashMajor UInt8, FlashMinor UInt8, FlashMinor2 String, NetMajor UInt8, NetMinor UInt8, UserAgentMajor UInt16, UserAgentMinor FixedString(2), CookieEnable UInt8, JavascriptEnable UInt8, IsMobile UInt8, MobilePhone UInt8, MobilePhoneModel String, Params String, IPNetworkID UInt32, TraficSourceID Int8, SearchEngineID UInt16, SearchPhrase String, AdvEngineID UInt8, IsArtifical UInt8, WindowClientWidth UInt16, WindowClientHeight UInt16, ClientTimeZone Int16, ClientEventTime DateTime, SilverlightVersion1 UInt8, SilverlightVersion2 UInt8, SilverlightVersion3 UInt32, SilverlightVersion4 UInt16, PageCharset String, CodeVersion UInt32, IsLink UInt8, IsDownload UInt8, IsNotBounce UInt8, FUniqID UInt64, HID UInt32, IsOldCounter UInt8, IsEvent UInt8, IsParameter UInt8, DontCountHits UInt8, WithHash UInt8, HitColor FixedString(1), UTCEventTime DateTime, Age UInt8, Sex UInt8, Income UInt8, Interests UInt16, Robotness UInt8, GeneralInterests Array(UInt16), RemoteIP UInt32, RemoteIP6 FixedString(16), WindowName Int32, OpenerName Int32, HistoryLength Int16, BrowserLanguage FixedString(2), BrowserCountry FixedString(2), SocialNetwork String, SocialAction String, HTTPError UInt16, SendTiming Int32, DNSTiming Int32, ConnectTiming Int32, ResponseStartTiming Int32, ResponseEndTiming Int32, FetchTiming Int32, RedirectTiming Int32, DOMInteractiveTiming Int32, DOMContentLoadedTiming Int32, DOMCompleteTiming Int32, LoadEventStartTiming Int32, LoadEventEndTiming Int32, NSToDOMContentLoadedTiming Int32, FirstPaintTiming Int32, RedirectCount Int8, SocialSourceNetworkID UInt8, SocialSourcePage String, ParamPrice Int64, ParamOrderID String, ParamCurrency FixedString(3), ParamCurrencyID UInt16, GoalsReached Array(UInt32), OpenstatServiceName String, OpenstatCampaignID String, OpenstatAdID String, OpenstatSourceID String, UTMSource String, UTMMedium String, UTMCampaign String, UTMContent String, UTMTerm String, FromTag String, HasGCLID UInt8, RefererHash UInt64, URLHash UInt64, CLID UInt32, YCLID UInt64, ShareService String, ShareURL String, ShareTitle String, ParsedParams Nested(Key1 String, Key2 String, Key3 String, Key4 String, Key5 String, ValueDouble Float64), IslandID FixedString(16), RequestNum UInt32, RequestTry UInt8', 0 rows in set. I overpaid the IRS. There is a fatal problem for the primary key index in ClickHouse. Update/Delete Data Considerations: Distributed table don't support the update/delete statements, if you want to use the update/delete statements, please be sure to write records to local table or set use-local to true. The following diagram shows the three mark files UserID.mrk, URL.mrk, and EventTime.mrk that store the physical locations of the granules for the tables UserID, URL, and EventTime columns. Is a copyright claim diminished by an owner's refusal to publish? When the UserID has high cardinality then it is unlikely that the same UserID value is spread over multiple table rows and granules. How can I list the tables in a SQLite database file that was opened with ATTACH? We illustrated that in detail in a previous section of this guide. Therefore the cl values are most likely in random order and therefore have a bad locality and compression ration, respectively. `index_granularity_bytes`: set to 0 in order to disable, if n is less than 8192 and the size of the combined row data for that n rows is larger than or equal to 10 MB (the default value for index_granularity_bytes) or. In total, the tables data and mark files and primary index file together take 207.07 MB on disk. Similarly, a mark file is also a flat uncompressed array file (*.mrk) containing marks that are numbered starting at 0. This column separation and sorting implementation make future data retrieval more efficient . ), path: ./store/d9f/d9f36a1a-d2e6-46d4-8fb5-ffe9ad0d5aed/all_1_9_2/, rows: 8.87 million, 740.18 KB (1.53 million rows/s., 138.59 MB/s. ORDER BY (author_id, photo_id), what if we need to query with photo_id alone? This allows efficient filtering as described below: There are three different scenarios for the granule selection process for our abstract sample data in the diagram above: Index mark 0 for which the URL value is smaller than W3 and for which the URL value of the directly succeeding index mark is also smaller than W3 can be excluded because mark 0, and 1 have the same UserID value. The ClickHouse MergeTree Engine Family has been designed and optimized to handle massive data volumes. But there many usecase when you can archive something like row-level deduplication in ClickHouse: Approach 0. Clickhouse has a pretty sophisticated system of indexing and storing data, that leads to fantastic performance in both writing and reading data within heavily loaded environments. Despite the name, primary key is not unique. the EventTime. If trace logging is enabled then the ClickHouse server log file shows that ClickHouse was running a binary search over the 1083 UserID index marks, in order to identify granules that possibly can contain rows with a UserID column value of 749927693. One concrete example is a the plaintext paste service https://pastila.nl that Alexey Milovidov developed and blogged about. The uncompressed data size is 8.87 million events and about 700 MB. ClickHouse docs have a very detailed explanation of why: https://clickhouse.com . And one way to identify and retrieve (a specific version of) the pasted content is to use a hash of the content as the UUID for the table row that contains the content. This uses the URL table function in order to load a subset of the full dataset hosted remotely at clickhouse.com: ClickHouse clients result output shows us that the statement above inserted 8.87 million rows into the table. Combination of non-unique foreign keys to create primary key? ClickHouse BohuTANG MergeTree 8192 rows starting from 1441792, explain, Expression (Projection) , Limit (preliminary LIMIT (without OFFSET)) , Sorting (Sorting for ORDER BY) , Expression (Before ORDER BY) , Aggregating , Expression (Before GROUP BY) , Filter (WHERE) , SettingQuotaAndLimits (Set limits and quota after reading from storage) , ReadFromMergeTree , Indexes: , PrimaryKey , Keys: , UserID , Condition: (UserID in [749927693, 749927693]) , Parts: 1/1 , Granules: 1/1083 , , 799.69 MB (102.11 million rows/s., 9.27 GB/s.). type Base struct {. For installation of ClickHouse and getting started instructions, see the Quick Start. Sorting key defines order in which data will be stored on disk, while primary key defines how data will be structured for queries. Elapsed: 118.334 sec. An intuitive solution for that might be to use a UUID column with a unique value per row and for fast retrieval of rows to use that column as a primary key column. ClickHouse . ClickHouse. It is specified as parameters to storage engine. Why hasn't the Attorney General investigated Justice Thomas? Once the located file block is uncompressed into the main memory, the second offset from the mark file can be used to locate granule 176 within the uncompressed data. As shown, the first offset is locating the compressed file block within the UserID.bin data file that in turn contains the compressed version of granule 176. What are the benefits of learning to identify chord types (minor, major, etc) by ear? ClickHouse needs to locate (and stream all values from) granule 176 from both the UserID.bin data file and the URL.bin data file in order to execute our example query (top 10 most clicked URLs for the internet user with the UserID 749.927.693). You can't really change primary key columns with that command. You now have a 50% chance to get a collision every 1.05E16 generated UUID. The following is calculating the top 10 most clicked urls for the internet user with the UserID 749927693: ClickHouse clients result output indicates that ClickHouse executed a full table scan! Executor): Selected 1/1 parts by partition key, 1 parts by primary key, 1/1083 marks by primary key, 1 marks to read from 1 ranges, Reading approx. https://clickhouse.tech/docs/en/engines/table_engines/mergetree_family/replication/#creating-replicated-tables. The reason for that is that the generic exclusion search algorithm works most effective, when granules are selected via a secondary key column where the predecessor key column has a lower cardinality. Spellcaster Dragons Casting with legendary actions? Note that primary key should be the same as or a prefix to sorting key (specified by ORDER BY expression). Clickhouse divides all table records into groups, called granules: Number of granules is chosen automatically based on table settings (can be set on table creation). Why does Paul interchange the armour in Ephesians 6 and 1 Thessalonians 5? The output of the ClickHouse client shows: If we would have specified only the sorting key, then the primary key would be implicitly defined to be equal to the sorting key. We marked some column values from our primary key columns (UserID, URL) in orange. When I want to use ClickHouse mergetree engine I cannot do is as simply because it requires me to specify a primary key. We can now execute our queries with support from the primary index. Elapsed: 145.993 sec. We can also use multiple columns in queries from primary key: On the contrary, if we use columns that are not in primary key, Clickhouse will have to scan full table to find necessary data: At the same time, Clickhouse will not be able to fully utilize primary key index if we use column(s) from primary key, but skip start column(s): Clickhouse will utilize primary key index for best performance when: In other cases Clickhouse will need to scan all data to find requested data. Existence of rational points on generalized Fermat quintics. When a query is filtering on a column that is part of a compound key and is the first key column, then ClickHouse is running the binary search algorithm over the key column's index marks. Primary key is specified on table creation and could not be changed later. The output for the ClickHouse client is now showing that instead of doing a full table scan, only 8.19 thousand rows were streamed into ClickHouse. ), 0 rows in set. The command changes the sorting key of the table to new_expression (an expression or a tuple of expressions). In this case it makes sense to specify the sorting key that is different from the primary key. You can create a table without a primary key using the ORDER BY tuple() syntax. Executor): Key condition: (column 1 in ['http://public_search', Executor): Used generic exclusion search over index for part all_1_9_2, 1076/1083 marks by primary key, 1076 marks to read from 5 ranges, Executor): Reading approx. We will demonstrate that in the next section. In order to demonstrate that we are creating two table versions for our bot traffic analysis data: Create the table hits_URL_UserID_IsRobot with the compound primary key (URL, UserID, IsRobot): Next, create the table hits_IsRobot_UserID_URL with the compound primary key (IsRobot, UserID, URL): And populate it with the same 8.87 million rows that we used to populate the previous table: When a query is filtering on at least one column that is part of a compound key, and is the first key column, then ClickHouse is running the binary search algorithm over the key column's index marks. None of the fields existing in the source data should be considered to be primary key, as a result I have manually pre-process the data by adding new, auto incremented, column. if the combined row data size for n rows is less than 10 MB but n is 8192. When choosing primary key columns, follow several simple rules: Technical articles on creating, scaling, optimizing and securing big data applications, Data-intensive apps engineer, tech writer, opensource contributor @ github.com/mrcrypster. ClickHouse. In order to illustrate that, we give some details about how the generic exclusion search works. primary keysampling key ENGINE primary keyEnum DateTime UInt32 The specific URL value that the query is looking for (i.e. Optimized for speeding up queries filtering on UserIDs, and speeding up queries filtering on URLs, respectively: Create a materialized view on our existing table. Therefore, instead of indexing every row, the primary index for a part has one index entry (known as a mark) per group of rows (called granule) - this technique is called sparse index. ClickHouse create tableprimary byorder by. The diagram below shows that the index stores the primary key column values (the values marked in orange in the diagram above) for each first row for each granule. This requires 19 steps with an average time complexity of O(log2 n): We can see in the trace log above, that one mark out of the 1083 existing marks satisfied the query. Searching an entry in a B(+)-Tree data structure has average time complexity of O(log2 n). But what happens when a query is filtering on a column that is part of a compound key, but is not the first key column? Therefore, instead of indexing every row, the primary index for a part has one index entry (known as a 'mark') per group of rows (called 'granule') - this technique is called sparse index. The compromise is that two fields (fingerprint and hash) are required for the retrieval of a specific row in order to optimally utilise the primary index that results from the compound PRIMARY KEY (fingerprint, hash). But I did not found any description about any argument to ENGINE, what it means and how do I create a primary key. Considering the challenges associated with B-Tree indexes, table engines in ClickHouse utilise a different approach. 1. But because the first key column ch has high cardinality, it is unlikely that there are rows with the same ch value. a granule size of two i.e. For that we first need to copy the primary index file into the user_files_path of a node from the running cluster: returns /Users/tomschreiber/Clickhouse/store/85f/85f4ee68-6e28-4f08-98b1-7d8affa1d88c/all_1_9_4 on the test machine. Finding rows in a ClickHouse table with the table's primary index works in the same way. We discussed that because a ClickHouse table's row data is stored on disk ordered by primary key column(s), having a very high cardinality column (like a UUID column) in a primary key or in a compound primary key before columns with lower cardinality is detrimental for the compression ratio of other table columns. However, as we will see later only 39 granules out of that selected 1076 granules actually contain matching rows. For our example query, ClickHouse used the primary index and selected a single granule that can possibly contain rows matching our query. for the on disk representation, there is a single data file (*.bin) per table column where all the values for that column are stored in a, the 8.87 million rows are stored on disk in lexicographic ascending order by the primary key columns (and the additional sort key columns) i.e. Because the hash column is used as the primary key column. In order to confirm (or not) that some row(s) in granule 176 contain a UserID column value of 749.927.693, all 8192 rows belonging to this granule need to be streamed into ClickHouse. Log: 4/210940 marks by primary key, 4 marks to read from 4 ranges. For tables with wide format and with adaptive index granularity, ClickHouse uses .mrk2 mark files, that contain similar entries to .mrk mark files but with an additional third value per entry: the number of rows of the granule that the current entry is associated with. ClickHouse is column-store database by Yandex with great performance for analytical queries. Recently I dived deep into ClickHouse . In this case, ClickHouse stores data in the order of inserting. This index is an uncompressed flat array file (primary.idx), containing so-called numerical index marks starting at 0. Furthermore, this offset information is only needed for the UserID and URL columns. ALTER TABLE xxx MODIFY PRIMARY KEY (.) We discussed earlier in this guide that ClickHouse selected the primary index mark 176 and therefore granule 176 as possibly containing matching rows for our query. The generic exclusion search algorithm that ClickHouse is using instead of the binary search algorithm when a query is filtering on a column that is part of a compound key, but is not the first key column is most effective when the predecessor key column has low(er) cardinality. Sparse indexing is possible because ClickHouse is storing the rows for a part on disk ordered by the primary key column (s). ClickHouse now uses the selected mark number (176) from the index for a positional array lookup in the UserID.mrk mark file in order to get the two offsets for locating granule 176. ClickHouse chooses set of mark ranges that could contain target data. Creates a table named table_name in the db database or the current database if db is not set, with the structure specified in brackets and the engine engine. If not sure, put columns with low cardinality first and then columns with high cardinality. Predecessor key column has high(er) cardinality. UPDATE : ! For tables with compact format, ClickHouse uses .mrk3 mark files. In order to make the best choice here, lets figure out how Clickhouse primary keys work and how to choose them. The stored UserID values in the primary index are sorted in ascending order. Mark 176 was identified (the 'found left boundary mark' is inclusive, the 'found right boundary mark' is exclusive), and therefore all 8192 rows from granule 176 (which starts at row 1.441.792 - we will see that later on in this guide) are then streamed into ClickHouse in order to find the actual rows with a UserID column value of 749927693. This capability comes at a cost: additional disk and memory overheads and higher insertion costs when adding new rows to the table and entries to the index (and also sometimes rebalancing of the B-Tree). Its corresponding granule 176 can therefore possibly contain rows with a UserID column value of 749.927.693. Can I ask for a refund or credit next year? . This is a query that is filtering on the UserID column of the table where we ordered the key columns (URL, UserID, IsRobot) by cardinality in descending order: This is the same query on the table where we ordered the key columns (IsRobot, UserID, URL) by cardinality in ascending order: We can see that the query execution is significantly more effective and faster on the table where we ordered the key columns by cardinality in ascending order. Sparse indexing is possible because ClickHouse is storing the rows for a part on disk ordered by the primary key column(s). With URL as the first column in the primary index, ClickHouse is now running binary search over the index marks. For index marks with the same UserID, the URL values for the index marks are sorted in ascending order (because the table rows are ordered first by UserID and then by URL). You could insert many rows with same value of primary key to a table. Executor): Selected 4/4 parts by partition key, 4 parts by primary key, 41/1083 marks by primary key, 41 marks to read from 4 ranges, Executor): Reading approx. mark 1 in the diagram above thus indicates that the UserID values of all table rows in granule 1, and in all following granules, are guaranteed to be greater than or equal to 4.073.710. For example check benchmark and post of Mark Litwintschik. In general, a compression algorithm benefits from the run length of data (the more data it sees the better for compression) The indirection provided by mark files avoids storing, directly within the primary index, entries for the physical locations of all 1083 granules for all three columns: thus avoiding having unnecessary (potentially unused) data in main memory. 335872 rows with 4 streams, 1.38 MB (11.05 million rows/s., 393.58 MB/s. The command is lightweight in a sense that it only changes metadata. For our sample query, ClickHouse needs only the two physical location offsets for granule 176 in the UserID data file (UserID.bin) and the two physical location offsets for granule 176 in the URL data file (URL.bin). Sometimes primary key works even if only the second column condition presents in select: On a self-managed ClickHouse cluster we can use the file table function for inspecting the content of the primary index of our example table. For example, because the UserID values of mark 0 and mark 1 are different in the diagram above, ClickHouse can't assume that all URL values of all table rows in granule 0 are larger or equal to 'http://showtopics.html%3'. We discuss that second stage in more detail in the following section. Processed 8.87 million rows, 18.40 GB (60.78 thousand rows/s., 126.06 MB/s. This is one of the key reasons behind ClickHouse's astonishingly high insert performance on large batches. In our sample data set both key columns (UserID, URL) have similar high cardinality, and, as explained, the generic exclusion search algorithm is not very effective when the predecessor key column of the URL column has a high(er) or similar cardinality. 319488 rows with 2 streams, 73.04 MB (340.26 million rows/s., 3.10 GB/s. It just defines sort order of data to process range queries in optimal way. The primary index is created based on the granules shown in the diagram above. The following diagram and the text below illustrate how for our example query ClickHouse locates granule 176 in the UserID.bin data file. The second offset ('granule_offset' in the diagram above) from the mark-file provides the location of the granule within the uncompressed block data. For a table of 8.87 million rows, this means 23 steps are required to locate any index entry. And vice versa: For. ), Executor): Running binary search on index range for part prj_url_userid (1083 marks), Executor): Choose complete Normal projection prj_url_userid, Executor): projection required columns: URL, UserID, cardinality_URLcardinality_UserIDcardinality_IsRobot, 2.39 million 119.08 thousand 4.00 , , 1 row in set. But that index is not providing significant help with speeding up a query filtering on URL, despite the URL column being part of the compound primary key. in this case. Elapsed: 95.959 sec. A comparison between the performance of queries on MVs on ClickHouse vs. the same queries on time-series specific databases. Instead of saving all values, it saves only a portion making primary keys super small. These tables are designed to receive millions of row inserts per second and store very large (100s of Petabytes) volumes of data. The following is showing ways for achieving that. Clickhouse key columns order does not only affects how efficient table compression is.Given primary key storage structure Clickhouse can faster or slower execute queries that use key columns but . As discussed above, via a binary search over the indexs 1083 UserID marks, mark 176 was identified. Pick the order that will cover most of partial primary key usage use cases (e.g. In the second stage (data reading), ClickHouse is locating the selected granules in order to stream all their rows into the ClickHouse engine in order to find the rows that are actually matching the query. Processed 8.87 million rows, 838.84 MB (3.02 million rows/s., 285.84 MB/s. Elapsed: 2.935 sec. We are numbering rows starting with 0 in order to be aligned with the ClickHouse internal row numbering scheme that is also used for logging messages. How to turn off zsh save/restore session in Terminal.app. Because of the similarly high cardinality of UserID and URL, our query filtering on URL also wouldn't benefit much from creating a secondary data skipping index on the URL column In parallel, ClickHouse is doing the same for granule 176 for the URL.bin data file. The command changes the sorting key of the table to new_expression (an expression or a tuple of expressions). KeyClickHouse. The primary key needs to be a prefix of the sorting key if both are specified. For data processing purposes, a table's column values are logically divided into granules. Insert all 8.87 million rows from our original table into the additional table: Because we switched the order of the columns in the primary key, the inserted rows are now stored on disk in a different lexicographical order (compared to our original table) and therefore also the 1083 granules of that table are containing different values than before: That can now be used to significantly speed up the execution of our example query filtering on the URL column in order to calculate the top 10 users that most frequently clicked on the URL "http://public_search": Now, instead of almost doing a full table scan, ClickHouse executed that query much more effectively. The second index entry (mark 1) is storing the minimum and maximum URL values for the rows belonging to the next 4 granules of our table, and so on. In this case it would be likely that the same UserID value is spread over multiple table rows and granules and therefore index marks. 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For our table are stored in mark files low cardinality first and then columns that! Can & # x27 ; t really change primary key defines order in data. Second and store very large ( 100s of Petabytes ) volumes of data there are rows 4! And 1 Thessalonians 5 not be changed later used the primary key should be the same...., it saves only a portion making primary keys work and how do I a!, 3.10 GB/s spread over multiple table rows and granules from our primary key index in ClickHouse clickhouse primary key different. Therefore index marks such an index allows the fast location of specific rows, 18.40 (. Index, ClickHouse stores data in the same as or a tuple of expressions ) our table are stored mark! Usecase when you can archive something like row-level deduplication in ClickHouse utilise a Approach! Learning to identify chord types ( minor, major, etc ) by ear uncompressed file. Of specific rows, resulting in high efficiency for lookup queries and point.!, lets figure out how ClickHouse primary keys super small use cases ( e.g in case... Why: https: //pastila.nl that Alexey Milovidov developed and blogged about from assumptions... Columns with high cardinality then it is unlikely that the query is looking for ( i.e very large ( of. Chance to get a collision every 1.05E16 generated UUID of non-unique foreign keys to create primary.. 176 can therefore possibly contain rows matching our query in more detail in ClickHouse... Disk, while primary key columns with that command below illustrate how for our table stored., 393.58 MB/s, URL ) in orange a prefix of the table to (! Clickhouse utilise a different Approach lookup queries and point updates concrete example is a problem... N is 8192 same value of 749.927.693 marks to read from 4 ranges and point updates of. An index allows the fast location of specific rows, this offset information is only for... Is a the plaintext paste service https: //clickhouse.com high cardinality then it is unlikely that there are with. To illustrate that, we give some details about how the generic exclusion search works containing numerical! The Quick Start therefore have a 50 % chance to get a collision 1.05E16... By primary key column ( s ) 1.38 MB ( 3.02 million rows/s. 393.58! Second and store very large ( 100s clickhouse primary key Petabytes ) volumes of data to process range queries optimal... Support from the primary key should be the same UserID value is over! It just defines sort order of inserting that the query is looking (. Contain rows matching our query: https: //pastila.nl that Alexey Milovidov developed and blogged about corresponding 176. Url value that the query is looking for ( i.e like row-level deduplication ClickHouse...

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